Intraspecific variations in recombination surface

As well as GWRR, we assessed the latest activities off recombination price across the chromosomes, hereafter described as recombination terrain, and you may compared her or him for every single pairwise blend of linkage maps and you may ranging from Damage and you may Flint pools. I desired to shot whether or not there had been intraspecific distinctions getting recombination landscapes given the large intraspecific diversity in the maize and the fact we observe a definite distinction ranging from contours from inside the hereditary variety analyses (look for Extra file dos getting info) and you may GWRR. Really for example maps demonstrated a tremendously effortless and you will monotonic pattern (such as, CFD01 chromosome one in Even more document eight). However, in certain maps, there are higher nations emptiness away from polymorphic ple, CFF07 chromosome 1 in Even more document seven), or even the chart produced a few synchronous horizontal contours out-of ple, CFF01 chromosome 3 during the Most file 7). Like parallel traces would-be said by the repeated chromosomal areas, you can easily problems in the B73 installation, and/otherwise low-copy-certain SNP markers who would locate paralogous sequences. In such instances, the brand new missing information are imputed of any kind of charts. Continue reading →